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Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context
Micah Dunthorn
,
Johannes Otto
,
Simon A. Berger
,
Alexandros Stamatakis
,
Frédéric Mahé
,
et al.
Journal articles
hal-01258215v1
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Laure Guillou
,
Dipankar Bachar
,
Stéphane Audic
,
David Bass
,
Cédric Berney
,
et al.
Journal articles
hal-01253994v1
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Molecular diversity and distribution of marine fungi across 130 European environmental samples
Thomas A. Richards
,
Guy Leonard
,
Frédéric Mahé
,
Javier Del Campo
,
Sarah Romac
,
et al.
Journal articles
hal-01258213v1
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Eukaryotic plankton diversity in the sunlit ocean
Noan Le Bescot
,
Ian Probert
,
Margaux Carmichael
,
Julie Poulain
,
Sarah Romac
,
et al.
Journal articles
hal-01253979v1
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PFR²: a curated database of planktonic Foraminifera18S ribosomal DNA as a resource for studies of plankton ecology, biogeography, and evolution
Raphaël Morard
,
Kate F Darling
,
Frédéric Mahé
,
Stéphane Audic
,
Yurika Ujiié
,
et al.
Journal articles
hal-01149023v2
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UniEuk : Time to Speak a Common Language in Protistology!
Cédric Berney
,
Andreea Ciuprina
,
Sara Bender
,
Juliet Brodie
,
Virginia Edgcomb
,
et al.
Journal articles
hal-01512649v1
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Vampires in the oceans: predatory cercozoan amoebae in marine habitats
Cédric Berney
,
Sarah Romac
,
Frédéric Mahé
,
Sébastien Santini
,
Raffaele Siano
,
et al.
Journal articles
hal-01258230v1
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Molecular Phylogeny and Morphological Evolution of the Acantharia (Radiolaria)
Johan Decelle
,
Noritoshi Suzuki
,
Frédéric Mahé
,
Colomban de Vargas
,
Fabrice Not
Journal articles
istex
hal-01258238v1
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Swarm v2: highly-scalable and high-resolution amplicon clustering
Frédéric Mahé
,
Torbjørn Rognes
,
Christopher Quince
,
Colomban de Vargas
,
Micah Dunthorn
Journal articles
hal-01271077v1
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Patterns of Rare and Abundant Marine Microbial Eukaryotes
Ramiro Logares
,
Stéphane Audic
,
David Bass
,
Lucie Bittner
,
Christophe Boutte
,
et al.
Journal articles
hal-01149637v1
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Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Noan Le Bescot
,
Frédéric Mahé
,
Stéphane Audic
,
Céline Dimier
,
Marie-Jose Garet
,
et al.
Journal articles
istex
hal-01305586v1
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Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?
Daniella Mella-Flores
,
S. Mazard
,
Florian Humily
,
Frédéric Partensky
,
Frédéric Mahé
,
et al.
Journal articles
hal-01218507v1
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Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing
Johan Decelle
,
Sarah Romac
,
Eriko Sasaki
,
Fabrice Not
,
Frédéric Mahé
Journal articles
hal-01100668v1
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Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans.
Johan Decelle
,
Patrick Martin
,
Katsiaryna Paborstava
,
David W Pond
,
Geraint Tarling
,
et al.
Journal articles
hal-00817877v1
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Swarm: robust and fast clustering method for amplicon-based studies
Frédéric Mahé
,
Torbjørn Rognes
,
Christopher Quince
,
Colomban de Vargas
,
Micah Dunthorn
Journal articles
hal-01245140v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
Ramon Massana
,
Angélique Gobet
,
Stéphane Audic
,
David Bass
,
Lucie Bittner
,
et al.
Journal articles
hal-01191731v1
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