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Document type : Journal articles
labStructName_t : Institute of Marine Sciences | Institut de Ciències del Mar [Barcelona]
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

Laure Guillou , Dipankar Bachar , Stéphane Audic , David Bass , Cédric Berney et al.
Nucleic Acids Research, 2013, 41 (D1), pp.D597-D604. ⟨10.1093/nar/gks1160⟩
Journal articles hal-01253994v1

Environmental characteristics of Agulhas rings affect interocean plankton transport

Emilie Villar , Gregory Farrant , Michael Follows , Laurence Garczarek , Sabrina Speich et al.
Science, 2015, 348 (6237), pp.1261447 - 1261447. ⟨10.1126/science.1261447⟩
Journal articles hal-01893637v1
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Benthic protists: the under-charted majority

Dominik Forster , Micah Dunthorn , Fréderic Mahé , John R. Dolan , Stéphane Audic et al.
FEMS Microbiology Ecology, 2016, 92 (8), pp.fiw120. ⟨10.1093/femsec/fiw120⟩
Journal articles hal-01383722v1
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Open science resources for the discovery and analysis of Tara Oceans data

Stéphane Pesant , Fabrice Not , Marc Picheral , Stefanie Kandels-Lewis , Noan Le Bescot et al.
Scientific Data , 2015, 2, pp.150023. ⟨10.1038/sdata.2015.23⟩
Journal articles hal-01253984v1
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Eukaryotic plankton diversity in the sunlit ocean

Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac et al.
Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩
Journal articles hal-01253979v1
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Analyzing the 2010-2011 La Niña signature in the tropical Pacific sea surface salinity using in situ data, SMOS observations, and a numerical simulation

Audrey Hasson , Thierry Delcroix , Jacqueline Boutin , Raphaël Dussin , Joaquim Ballabrera-Poy et al.
Journal of Geophysical Research. Oceans, 2014, 119 (6), pp.3855-3867. ⟨10.1002/2013JC009388⟩
Journal articles hal-01233655v1

Molecular diversity and distribution of marine fungi across 130 European environmental samples

Thomas A. Richards , Guy Leonard , Frédéric Mahé , Javier Del Campo , Sarah Romac et al.
Proceedings of the Royal Society B: Biological Sciences, 2015, 282 (1819), pp.20152243. ⟨10.1098/rspb.2015.2243⟩
Journal articles hal-01258213v1

Patterns and ecological drivers of ocean viral communities

Jennifer Brum , J Cesar Ignacio-Espinoza , Simon Roux , Guilhem Doulcier , Silvia G. Acinas et al.
Science, 2015, 348 ( 6237), pp.1261498. ⟨10.1126/science.1261498⟩
Journal articles hal-01768331v1
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Quantification of larval traits driving connectivity: the case of Corallium rubrum (L. 1758)

A. Martínez-Quintana , L. Bramanti , N. Viladrich , S. Rossi , Katell Guizien et al.
Marine Biology, 2015, 162 (2), pp.309-318. ⟨10.1007/s00227-014-2599-z⟩
Journal articles hal-02955364v1

First EURONEAR NEA discoveries from La Palma using the INT★

O. Vaduvescu , L. Hudin , V. Tudor , F. Char , T. Mocnik et al.
Monthly Notices of the Royal Astronomical Society, 2015, 449 (2), pp.1614-1624. ⟨10.1093/mnras/stv266⟩
Journal articles hal-02471021v1

The Bransfield current system

Pablo Sangrà , Carmen Gordo , Mónica Hernández-Arencibia , Angeles Marrero-Díaz , Angel Rodríguez-Santana et al.
Deep Sea Research Part I: Oceanographic Research Papers, 2011, 58 (4), pp.390-402. ⟨10.1016/j.dsr.2011.01.011⟩
Journal articles istex hal-00838861v1

The WISE 2000 and 2001 Field Experiments in Support of the SMOS Mission:Sea Surface L-Band Brightness Temperature Observations and Their Application to Sea Surface Salinity Retrieval.

Adriano Camps , Jordi Font , Merce Vall-Llossera , Carolina Gabarró , Ignasi Corbella et al.
IEEE Transactions on Geoscience and Remote Sensing, 2004, 42 (4), pp.804-823. ⟨10.1109/TGRS.2003.819444⟩
Journal articles hal-00145587v1

Diel variations of the DMSP-to-chlorophyll a ratio in Northwestern Mediterranean surface waters

S. Belviso , U. Christaki , F. Vidussi , J.C. Marty , M. Vila et al.
Journal of Marine Systems, 2000, 25 (2), pp.119-128. ⟨10.1016/S0924-7963(00)00011-7⟩
Journal articles istex hal-03111624v1

Low Evolutionary Diversification in a Widespread and Abundant Uncultured Protist (MAST-4)

Raquel Rodriguez-Martinez , Gabrielle Rocap , Ramiro Logares , Sarah Romac , Ramon Massana et al.
Molecular Biology and Evolution, 2012, 29 (5), pp.1393-1406. ⟨10.1093/molbev/msr303⟩
Journal articles hal-01258232v1

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

Ramiro Logares , Stéphane Audic , Sébastien Santini , Massimo C. Pernice , Colomban de Vargas et al.
ISME Journal, 2012, 6 (10), pp.1823-1833. ⟨10.1038/ismej.2012.36⟩
Journal articles hal-01258237v1
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Global distribution and vertical patterns of a prymnesiophyte–cyanobacteria obligate symbiosis

Ana M Cabello , Francisco M Cornejo-Castillo , Nicolas Raho , Dolors Blasco , Montserrat Vidal et al.
ISME Journal, 2016, 10 (3), pp.693-706. ⟨10.1038/ismej.2015.147⟩
Journal articles hal-01289124v1
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

Francisco M. Cornejo-Castillo , Ana M. Cabello , Guillem Salazar , Patricia Sánchez-Baracaldo , Gipsi Lima-Mendez et al.
Nature Communications, 2016, 7, pp.11071. ⟨10.1038/ncomms11071⟩
Journal articles hal-01295207v1
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Changes in bacterial community metabolism and composition during the degradation of dissolved organic matter from the jellyfish Aurelia aurita in a Mediterranean coastal lagoon

Marine Blanchet , Olivier Pringault , Marc Bouvy , Philippe Catala , Louise Oriol et al.
Environmental Science and Pollution Research, 2015, 22 (18), pp.13638-13653. ⟨10.1007/s11356-014-3848-x⟩
Journal articles hal-01103187v1
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Interaction of dense shelf water cascading and open-sea convection in the northwestern Mediterranean during winter 2012

Xavier Durrieu de Madron , Loïc Houpert , Pere Puig , A. Sanchez-Vidal , Pierre Testor et al.
Geophysical Research Letters, 2013, 40 (7), pp.1379-1385. ⟨10.1002/GRL.50331⟩
Journal articles hal-00873390v1
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The significance of the episodic nature of atmospheric deposition to Low Nutrient Low Chlorophyll regions

C. Guieu , O. Aumont , A. Paytan , L. Bopp , C.S. Law et al.
Global Biogeochemical Cycles, 2014, pp.1179-1198. ⟨10.1002/2014GB004852⟩
Journal articles hal-01110987v1
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The SMOS mission: new tool for monitoring key elements of the global water cycle

Yann H. Kerr , Philippe Waldteufel , Jean-Pierre Wigneron , Steven Delwart , François Cabot et al.
Proceedings of the IEEE, 2010, 98 (5), pp.666-687. ⟨10.1109/JPROC.2010.2043032⟩
Journal articles ird-00494925v1
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Plankton networks driving carbon export in the oligotrophic ocean

Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi et al.
Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩
Journal articles hal-01275276v1
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The ocean sampling day consortium

Anna Kopf , Mesude Bicak , Renzo Kottmann , Julia Schnetzer , Ivaylo Kostadinov et al.
GigaScience, 2015, 4 (1), pp.27. ⟨10.1186/s13742-015-0066-5⟩
Journal articles hal-01174095v1
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Exploring Microdiversity in Novel Kordia sp (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

Marta Royo-Llonch , Isabel Ferrera , Francisco M. Cornejo-Castillo , Pablo Sánchez , Guillem Salazar et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01317⟩
Journal articles hal-03502952v1

Coastal Mediterranean plankton stimulation dynamics through a dust storm event: An experimental simulation

Estela Romero , Francesc Peters , Celia Marrase , Oscar Guadayol , Josep M. Gasol et al.
ESTUARINE COASTAL AND SHELF SCIENCE, 2011, 93 (1), pp.27-39. ⟨10.1016/j.ecss.2011.03.019⟩
Journal articles istex hal-03502028v1

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs

Thijs Frenken , Elisabet Alacid , Stella A. Berger , Elizabeth C. Bourne , Mélanie Gerphagnon et al.
Environmental Microbiology, 2017, 19 (10), pp.3802 - 3822. ⟨10.1111/1462-2920.13827⟩
Journal articles hal-01624039v1
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General Patterns of Diversity in Major Marine Microeukaryote Lineages

Massimo C. Pernice , Ramiro Logares , Laure Guillou , Ramon Massana
PLoS ONE, 2013, 8 (2), pp.e57170. ⟨10.1371/journal.pone.0057170⟩
Journal articles hal-01253995v1
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Reply to comment: Prey perception in feeding-current feeding copepods

Thomas Kiørboe , Rodrigo J. Gonçalves , Damien Couespel , Hans van Someren Gréve , Enric Saiz et al.
Limnology and Oceanography Bulletin, 2016, 61 (4), pp.1169 - 1171. ⟨10.1002/lno.10293⟩
Journal articles hal-01497591v1
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Structure and function of the global ocean microbiome

Shinichi Sunagawa , Luis Pedro Coelho , Samuel Chaffron , Jens Roat Kultima , Karine Labadie et al.
Science, 2015, 348 (6237), pp.1261359. ⟨10.1126/science.1261359⟩
Journal articles hal-01233742v1
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Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles

Corinne Le Quéré , Erik T. Buitenhuis , Róisín Moriarty , Séverine Alvain , Olivier Aumont et al.
Biogeosciences, 2016, 13 (14), pp.4111 - 4133. ⟨10.5194/bg-13-4111-2016⟩
Journal articles hal-01504558v1
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Characteristics of colored dissolved organic matter (CDOM) in the Western Arctic Ocean: relationships with microbial activities

Atsushi Matsuoka , Eva Ortega-Retuerta , Annick Bricaud , Kevin R Arrigo , Marcel Babin et al.
Deep Sea Research Part II: Topical Studies in Oceanography, 2015, 118 (Part A), pp.44-52. ⟨10.1016/j.dsr2.2015.02.012⟩
Journal articles hal-01120307v1
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When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition

Marine Blanchet , Olivier Pringault , Christos Panagiotopoulos , Dominique Lefèvre , Bruno Charrìère et al.
Aquatic Sciences - Research Across Boundaries, 2017, 79 (1), pp.27-43. ⟨10.1007/s00027-016-0477-0⟩
Journal articles hal-01285402v1
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Patterns of Rare and Abundant Marine Microbial Eukaryotes

Ramiro Logares , Stéphane Audic , David Bass , Lucie Bittner , Christophe Boutte et al.
Current Biology - CB, 2014, 24 (8), pp.813-821. ⟨10.1016/j.cub.2014.02.050⟩
Journal articles hal-01149637v1
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

Pascal Hingamp , Nigel Grimsley , Silvia G Acinas , Camille Clerissi , Lucie Subirana et al.
ISME Journal, 2013, 7 (9), pp.1678-1695. ⟨10.1038/ismej.2013.59⟩
Journal articles hal-01258223v1
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Environmental sequencing provides reasonable estimates of the relative abundance of specific picoeukaryotes

Caterina R. Giner , Irene Forn , Sarah Romac , Ramiro Logares , Colomban de Vargas et al.
Applied and Environmental Microbiology, 2016, 82 (15), pp.4757-4766. ⟨10.1128/AEM.00560-16⟩
Journal articles hal-01332059v1

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Ramiro Logares , Shinichi Sunagawa , Guillem Salazar , Francisco M. Cornejo-Castillo , Isabel Ferrera et al.
Environmental Microbiology, 2014, 16 (9, SI), pp.2659-2671. ⟨10.1111/1462-2920.12250⟩
Journal articles istex hal-01258219v1
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Defining Planktonic Protist Functional Groups on Mechanisms for Energy and Nutrient Acquisition: Incorporation of Diverse Mixotrophic Strategies

Aditee Mitra , Kevin J. Flynn , Urban Tillmann , John A. Raven , David Caron et al.
Protist, 2016, 167 (2), pp.106-120. ⟨10.1016/j.protis.2016.01.003⟩
Journal articles hal-01285634v1

Comparison between Eulerian diagnostics and finite-size Lyapunov exponents computed from altimetry in the Algerian basin

Francesco d'Ovidio , Jordi Isern-Fontanet , Cristóbal López , Emilio Hernández-García , Emilio García-Ladona et al.
Deep Sea Research Part I: Oceanographic Research Papers, 2009, 56 (1), pp.15-31. ⟨10.1016/J.DSR.2008.07.014⟩
Journal articles hal-00759988v1

SMOS first data analysis for sea surface salinity determination

Jordi Font , Jacqueline Boutin , Nicolas Reul , Paul Spurgeon , Joaquim Ballabrera-Poy et al.
International Journal of Remote Sensing, 2013, 34 (9-10), pp.3654-3670. ⟨10.1080/01431161.2012.716541⟩
Journal articles hal-00812747v1
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Adriana A. Alberti , Julie Poulain , Stefan Engelen , Karine Labadie , Sarah Romac et al.
Scientific Data , 2017, 4, ⟨10.1038/sdata.2017.93⟩
Journal articles hal-01771844v1
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Sediment dispersal from a typical Mediterranean flood: The Têt River, Gulf of Lions

François Bourrin , Patrick L Friend , Carl L Amos , Eleonora Manca , Caroline Ulses et al.
Continental Shelf Research, 2008, 28 (15), pp.1895-1910. ⟨10.1016/j.csr.2008.06.005⟩
Journal articles hal-00519751v1
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Impacts of ocean acidification in a warming Mediterranean Sea: An overview

Thomas Lacoue-Labarthe , Paulo A.L.D. Nunes , Patrizia Ziveri , Mine Cinar , Frédéric Gazeau et al.
Regional Studies in Marine Science, 2016, ⟨10.1016/j.rsma.2015.12.005⟩
Journal articles hal-01253944v1
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Validation of Salinity Data from Surface Drifters

Gilles Reverdin , Simon Morisset , Jacqueline Boutin , Nicolas Martin , M. Sena-Martins et al.
Journal of Atmospheric and Oceanic Technology, 2014, 31 (4), pp.967-983. ⟨10.1175/JTECH-D-13-00158.1⟩
Journal articles hal-01128443v1
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New Insights into the Diversity of Marine Picoeukaryotes

Fabrice Not , Javier Del Campo , Vanessa Balague , Colomban de Vargas , Ramon Massana et al.
PLoS ONE, 2009, 4 (9), pp.e7143. ⟨10.1371/journal.pone.0007143⟩
Journal articles hal-01258270v1

Soil moisture retrieval from space: the Soil Moisture and Ocean Salinity (SMOS) mission

Yann H. Kerr , Philippe Waldteufel , Jean-Pierre Wigneron , J. Martinuzzi , J. Font et al.
IEEE Transactions on Geoscience and Remote Sensing, 2001, 39 (8), pp.1729 - 1735. ⟨10.1109/36.942551⟩
Journal articles hal-01655355v1

Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum.

Eva Ortega-Retuerta , Mireia Mestre , Isabel Ferrera , Encarna Borrull , Eva Ortega-Retuerta et al.
Molecular Ecology, 2017
Journal articles hal-04003665v1
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Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

Camille Clerissi , Yves Desdevises , Sarah Romac , Stéphane Audic , Colomban de Vargas et al.
Environmental Microbiology Reports, 2015, 7 (6), pp.979-989. ⟨10.1111/1758-2229.12345⟩
Journal articles hal-01246259v1
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A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience

A. Crise , H. Kaberi , J. Ruiz , A. Zatsepin , E. Arashkevich et al.
Marine Pollution Bulletin, 2015, 95 (1), pp.28-39. ⟨10.1016/j.marpolbul.2015.03.024⟩
Journal articles hal-01169407v1
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A Holistic Approach to Marine Eco-Systems Biology

Eric Karsenti , Silvia G. Acinas , Peer Bork , Chris Bowler , Colomban de Vargas et al.
PLoS Biology, 2011, 9 (10), pp.e1001177. ⟨10.1371/journal.pbio.1001177⟩
Journal articles hal-01893669v1

Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (NW Mediterranean)

Julia A. Boras , M. Montserrat Sala , Evaristo Vazquez-Dominguez , Markus G Weinbauer , Dolors Vaque et al.
Environmental Microbiology, 2009, 11 (5), pp.1181-1193. ⟨10.1111/j.1462-2920.2008.01849.x⟩
Journal articles istex hal-03505023v1