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labStructName_t : Institute of Marine Sciences | Institut de Ciències del Mar [Barcelona]
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A Holistic Approach to Marine Eco-Systems Biology

Eric Karsenti , Silvia G. Acinas , Peer Bork , Chris Bowler , Colomban de Vargas et al.
PLoS Biology, 2011, 9 (10), pp.e1001177. ⟨10.1371/journal.pbio.1001177⟩
Journal articles hal-01893669v1

A Lagrangian study tracing water parcel origins in the Canary Upwelling System

Evan Mason , François Colas , Josep L. Pelegrí
Scientia Marina, 2012, 76 (S1), pp.79 - 94. ⟨10.3989/scimar.03608.18D⟩
Journal articles hal-01495951v1
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A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience

A. Crise , H. Kaberi , J. Ruiz , A. Zatsepin , E. Arashkevich et al.
Marine Pollution Bulletin, 2015, 95 (1), pp.28-39. ⟨10.1016/j.marpolbul.2015.03.024⟩
Journal articles hal-01169407v1
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Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells

Jean-François Mangot , Ramiro Logares , Pablo Sánchez , Fran Latorre , Yoann 6 Seeleuthner et al.
Scientific Reports, 2017, 7, pp.41498. ⟨10.1038/srep41498⟩
Journal articles hal-01466618v1

An original mode of symbiosis in open ocean plankton

Johan Decelle , Ian Probert , Lucie Bittner , Yves Desdevises , Sébastien Colin et al.
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (44), pp.18000-18005. ⟨10.1073/pnas.1212303109⟩
Journal articles hal-01258241v1
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Analyzing the 2010-2011 La Niña signature in the tropical Pacific sea surface salinity using in situ data, SMOS observations, and a numerical simulation

Audrey Hasson , Thierry Delcroix , Jacqueline Boutin , Raphaël Dussin , Joaquim Ballabrera-Poy et al.
Journal of Geophysical Research. Oceans, 2014, 119 (6), pp.3855-3867. ⟨10.1002/2013JC009388⟩
Journal articles hal-01233655v1

Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (NW Mediterranean)

Julia A. Boras , M. Montserrat Sala , Evaristo Vazquez-Dominguez , Markus G Weinbauer , Dolors Vaque et al.
Environmental Microbiology, 2009, 11 (5), pp.1181-1193. ⟨10.1111/j.1462-2920.2008.01849.x⟩
Journal articles istex hal-03505023v1
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Benthic protists: the under-charted majority

Dominik Forster , Micah Dunthorn , Fréderic Mahé , John R. Dolan , Stéphane Audic et al.
FEMS Microbiology Ecology, 2016, 92 (8), pp.fiw120. ⟨10.1093/femsec/fiw120⟩
Journal articles hal-01383722v1
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Changes in bacterial community metabolism and composition during the degradation of dissolved organic matter from the jellyfish Aurelia aurita in a Mediterranean coastal lagoon

Marine Blanchet , Olivier Pringault , Marc Bouvy , Philippe Catala , Louise Oriol et al.
Environmental Science and Pollution Research, 2015, 22 (18), pp.13638-13653. ⟨10.1007/s11356-014-3848-x⟩
Journal articles hal-01103187v1
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Characteristics of colored dissolved organic matter (CDOM) in the Western Arctic Ocean: relationships with microbial activities

Atsushi Matsuoka , Eva Ortega-Retuerta , Annick Bricaud , Kevin R Arrigo , Marcel Babin et al.
Deep Sea Research Part II: Topical Studies in Oceanography, 2015, 118 (Part A), pp.44-52. ⟨10.1016/j.dsr2.2015.02.012⟩
Journal articles hal-01120307v1

Coastal Mediterranean plankton stimulation dynamics through a dust storm event: An experimental simulation

Estela Romero , Francesc Peters , Celia Marrase , Oscar Guadayol , Josep M. Gasol et al.
ESTUARINE COASTAL AND SHELF SCIENCE, 2011, 93 (1), pp.27-39. ⟨10.1016/j.ecss.2011.03.019⟩
Journal articles istex hal-03502028v1

Comparison between Eulerian diagnostics and finite-size Lyapunov exponents computed from altimetry in the Algerian basin

Francesco d'Ovidio , Jordi Isern-Fontanet , Cristóbal López , Emilio Hernández-García , Emilio García-Ladona et al.
Deep Sea Research Part I: Oceanographic Research Papers, 2009, 56 (1), pp.15-31. ⟨10.1016/J.DSR.2008.07.014⟩
Journal articles hal-00759988v1
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Comparison of global climatological maps of sea surface dimethyl sulfide

Sauveur Belviso , L. Bopp , C. Moulin , James C. Orr , T.R. Anderson et al.
Global Biogeochemical Cycles, 2004, 18 (3), ⟨10.1029/2003GB002193⟩
Journal articles hal-03111762v1
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Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

Francisco M. Cornejo-Castillo , Ana M. Cabello , Guillem Salazar , Patricia Sánchez-Baracaldo , Gipsi Lima-Mendez et al.
Nature Communications, 2016, 7, pp.11071. ⟨10.1038/ncomms11071⟩
Journal articles hal-01295207v1
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Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

Camille Clerissi , Yves Desdevises , Sarah Romac , Stéphane Audic , Colomban de Vargas et al.
Environmental Microbiology Reports, 2015, 7 (6), pp.979-989. ⟨10.1111/1758-2229.12345⟩
Journal articles hal-01246259v1
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Defining Planktonic Protist Functional Groups on Mechanisms for Energy and Nutrient Acquisition: Incorporation of Diverse Mixotrophic Strategies

Aditee Mitra , Kevin J. Flynn , Urban Tillmann , John A. Raven , David Caron et al.
Protist, 2016, 167 (2), pp.106-120. ⟨10.1016/j.protis.2016.01.003⟩
Journal articles hal-01285634v1
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Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Gregory K. Farrant , Hugo Doré , Francisco M. Cornejo-Castillo , Frédéric Partensky , Morgane Ratin et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (24), pp.E3365-E3374. ⟨10.1073/pnas.1524865113⟩
Journal articles hal-01331214v1

Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin et al.
Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩
Journal articles hal-01234200v1

Diel variations of the DMSP-to-chlorophyll a ratio in Northwestern Mediterranean surface waters

S. Belviso , U. Christaki , F. Vidussi , J.C. Marty , M. Vila et al.
Journal of Marine Systems, 2000, 25 (2), pp.119-128. ⟨10.1016/S0924-7963(00)00011-7⟩
Journal articles istex hal-03111624v1
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Dimethylated sulfur compounds in symbiotic protists: A potentially significant source for marine DMS(P)

Andres Gutierrez-Rodriguez , Loic Pillet , Tristan Biard , Ward Said-Ahmad , Alon Amrani et al.
Limnology and Oceanography, 2017, 62 (3 ), pp.1139-1154 ⟨10.1002/lno.10491⟩
Journal articles hal-01480231v1

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing

Javier Del Campo , Diego Mallo , Ramon Massana , Colomban de Vargas , Thomas A. Richards et al.
Environmental Microbiology, 2015, 17 (9), pp.3195-3207. ⟨10.1111/1462-2920.12759⟩
Journal articles hal-01258208v1

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

Ramiro Logares , Stéphane Audic , Sébastien Santini , Massimo C. Pernice , Colomban de Vargas et al.
ISME Journal, 2012, 6 (10), pp.1823-1833. ⟨10.1038/ismej.2012.36⟩
Journal articles hal-01258237v1
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Simon Roux , Jennifer R. Brum , Bas E. Dutilh , Shinichi Sunagawa , Melissa B. Duhaime et al.
Nature, 2016, 537 (7622), pp.689-693. ⟨10.1038/nature19366⟩
Journal articles hal-01376822v1

Effects of a dust deposition event on coastal marine microbial abundance and activity, bacterial community structure and ecosystem function

Itziar Lekunberri , Thomas Lefort , Estela Romero , Evaristo Vazquez-Dominguez , Cristina Romera-Castillo et al.
Journal of Plankton Research, 2010, 32 (4), pp.381-396. ⟨10.1093/plankt/fbp137⟩
Journal articles hal-03502071v1

Environmental characteristics of Agulhas rings affect interocean plankton transport

Emilie Villar , Gregory Farrant , Michael Follows , Laurence Garczarek , Sabrina Speich et al.
Science, 2015, 348 (6237), pp.1261447 - 1261447. ⟨10.1126/science.1261447⟩
Journal articles hal-01893637v1
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Environmental sequencing provides reasonable estimates of the relative abundance of specific picoeukaryotes

Caterina R. Giner , Irene Forn , Sarah Romac , Ramiro Logares , Colomban de Vargas et al.
Applied and Environmental Microbiology, 2016, 82 (15), pp.4757-4766. ⟨10.1128/AEM.00560-16⟩
Journal articles hal-01332059v1
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Eukaryotic plankton diversity in the sunlit ocean

Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac et al.
Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩
Journal articles hal-01253979v1
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Exploring Microdiversity in Novel Kordia sp (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

Marta Royo-Llonch , Isabel Ferrera , Francisco M. Cornejo-Castillo , Pablo Sánchez , Guillem Salazar et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01317⟩
Journal articles hal-03502952v1
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

Pascal Hingamp , Nigel Grimsley , Silvia G Acinas , Camille Clerissi , Lucie Subirana et al.
ISME Journal, 2013, 7 (9), pp.1678-1695. ⟨10.1038/ismej.2013.59⟩
Journal articles hal-01258223v1

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

Ramon Massana , Javier Del Campo , Michael E. Sieracki , Stéphane Audic , Ramiro Logares et al.
ISME Journal, 2014, 8 (4), pp.854-866. ⟨10.1038/ismej.2013.204⟩
Journal articles hal-01258217v1

Fine-grained sediment dynamics during a strong storm event in the inner-shelf of the Gulf of Lion (NW Mediterranean)

B. Ferré , K. Guizien , Xavier Durrieu de Madron , A. Palanques , J. Guillén et al.
Continental Shelf Research, 2005, 25, pp.2410-2427
Journal articles hal-00090181v1

First EURONEAR NEA discoveries from La Palma using the INT★

O. Vaduvescu , L. Hudin , V. Tudor , F. Char , T. Mocnik et al.
Monthly Notices of the Royal Astronomical Society, 2015, 449 (2), pp.1614-1624. ⟨10.1093/mnras/stv266⟩
Journal articles hal-02471021v1
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General Patterns of Diversity in Major Marine Microeukaryote Lineages

Massimo C. Pernice , Ramiro Logares , Laure Guillou , Ramon Massana
PLoS ONE, 2013, 8 (2), pp.e57170. ⟨10.1371/journal.pone.0057170⟩
Journal articles hal-01253995v1
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Glider monitoring of shelf suspended particle dynamics and transport during storm and flooding conditions

François Bourrin , Gaël Many , Xavier Durrieu de Madron , Jacobo Martín , Pere Puig et al.
Continental Shelf Research, 2015, 109, pp.135-149. ⟨10.1016/j.csr.2015.08.031⟩
Journal articles hal-01220695v1
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Global distribution and vertical patterns of a prymnesiophyte–cyanobacteria obligate symbiosis

Ana M Cabello , Francisco M Cornejo-Castillo , Nicolas Raho , Dolors Blasco , Montserrat Vidal et al.
ISME Journal, 2016, 10 (3), pp.693-706. ⟨10.1038/ismej.2015.147⟩
Journal articles hal-01289124v1

Grazing rates and functional diversity of uncultured heterotrophic flagellates

Ramon Massana , Fernando Unrein , Raquel Rodriguez-Martinez , Irene Forn , Thomas Lefort et al.
ISME Journal, 2009, 3 (5), pp.588-596. ⟨10.1038/ismej.2008.130⟩
Journal articles hal-01258258v1
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Impacts of ocean acidification in a warming Mediterranean Sea: An overview

Thomas Lacoue-Labarthe , Paulo A.L.D. Nunes , Patrizia Ziveri , Mine Cinar , Frédéric Gazeau et al.
Regional Studies in Marine Science, 2016, ⟨10.1016/j.rsma.2015.12.005⟩
Journal articles hal-01253944v1

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs

Thijs Frenken , Elisabet Alacid , Stella A. Berger , Elizabeth C. Bourne , Mélanie Gerphagnon et al.
Environmental Microbiology, 2017, 19 (10), pp.3802 - 3822. ⟨10.1111/1462-2920.13827⟩
Journal articles hal-01624039v1

Interaction of dense dense shelf water cascading and open-sea convection in the Northwestern Mediterranean during winter 2012.

Xavier Durrieu de Madron , Loïc Houpert , Pere Puig , Anna Sanchez-Vidal , Pierre Testor et al.
EGU General Assembly 2013, Apr 2013, Vienne, Austria. pp.10889
Conference papers hal-00920704v1
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Interaction of dense shelf water cascading and open-sea convection in the northwestern Mediterranean during winter 2012

Xavier Durrieu de Madron , Loïc Houpert , Pere Puig , A. Sanchez-Vidal , Pierre Testor et al.
Geophysical Research Letters, 2013, 40 (7), pp.1379-1385. ⟨10.1002/GRL.50331⟩
Journal articles hal-00873390v1

Limited Genetic Connectivity between Gorgonian Morphotypes along a Depth Gradient

Federica Costantini , Andrea Gori , Pablo Lopez-González , Lorenzo Bramanti , Sergio Rossi et al.
PLoS ONE, 2016, 11 (8), pp.e0160678. ⟨10.1371/journal.pone.0160678⟩
Journal articles hal-01369559v1

Low Evolutionary Diversification in a Widespread and Abundant Uncultured Protist (MAST-4)

Raquel Rodriguez-Martinez , Gabrielle Rocap , Ramiro Logares , Sarah Romac , Ramon Massana et al.
Molecular Biology and Evolution, 2012, 29 (5), pp.1393-1406. ⟨10.1093/molbev/msr303⟩
Journal articles hal-01258232v1

Macroepibenthic communities at the tip of the Antarctic Peninsula, an ecological survey at different spatial scales.

Julian Gutt , M. C. Alvaro , A. Barco , A. Böhmer , A. Bracher et al.
Polar Biology, 2016, 39 (5), pp.829-849. ⟨10.1007/s00300-015-1797-6⟩
Journal articles hal-01310185v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner et al.
Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩
Journal articles hal-01191731v1

Mediterranean marine copepods: basin-scale trends of the calanoid Centropages typicus

J. C. Molinero , V. Vukanic , D. Lucic , F. Ibanez , P. Nival et al.
HYDROBIOLOGIA, 2009, 617, pp.41-53. ⟨10.1007/s10750-008-9524-8⟩
Journal articles istex hal-03505033v1

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Ramiro Logares , Shinichi Sunagawa , Guillem Salazar , Francisco M. Cornejo-Castillo , Isabel Ferrera et al.
Environmental Microbiology, 2014, 16 (9, SI), pp.2659-2671. ⟨10.1111/1462-2920.12250⟩
Journal articles istex hal-01258219v1

Molecular diversity and distribution of marine fungi across 130 European environmental samples

Thomas A. Richards , Guy Leonard , Frédéric Mahé , Javier Del Campo , Sarah Romac et al.
Proceedings of the Royal Society B: Biological Sciences, 2015, 282 (1819), pp.20152243. ⟨10.1098/rspb.2015.2243⟩
Journal articles hal-01258213v1
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New Insights into the Diversity of Marine Picoeukaryotes

Fabrice Not , Javier Del Campo , Vanessa Balague , Colomban de Vargas , Ramon Massana et al.
PLoS ONE, 2009, 4 (9), pp.e7143. ⟨10.1371/journal.pone.0007143⟩
Journal articles hal-01258270v1
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New radiometers: SMOS-a dual pol L-band 2D aperture synthesis radiometer

Yann H. Kerr , Jordi Font , Philippe Waldteufel , Adriano J. Camps , Javier Bara et al.
2000 IEEE Aerospace Conference Proceedings, Mar 2000, Big Sky, MT, United States. pp.119-128, ⟨10.1109/AERO.2000.878481⟩
Conference papers hal-01655324v1
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Open science resources for the discovery and analysis of Tara Oceans data

Stéphane Pesant , Fabrice Not , Marc Picheral , Stefanie Kandels-Lewis , Noan Le Bescot et al.
Scientific Data , 2015, 2, pp.150023. ⟨10.1038/sdata.2015.23⟩
Journal articles hal-01253984v1