Community The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing - Université Pierre et Marie Curie Access content directly
Journal Articles PLoS Biology Year : 2014

Community The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

Patrick J Keeling (1, 2) , Fabien Burki (2) , Heather M. Wilcox (3) , Bassem Allam (4) , Eric E Allen (5) , Linda Amaral-Zettler (6, 7) , E Virginia Armbrust (8) , John M. Archibald (1, 9) , Arvind K. Bharti (10) , Callum J. Bell (10) , Bank Beszteri (11) , Kay D. Bidle (12) , Connor T. Cameron (10) , Lisa Campbell (13) , David A. Caron (14) , Rose Ann Cattolico (14) , Jackie L. Collier (4) , Kathryn Coyne (15) , Simon K. Davy (16) , Phillipe Deschamps (17) , Sonya T. Dyhrman (18) , Bente Edvarsen (19) , Ruth D Gates (20) , Christopher J. Gobler (4) , Spencer J. Greenwood (21) , Stephanie M. Guida (10) , Jennifer L. Jacobi (10) , Kjetill S. Jakobsen (19) , Erick R James (2) , Bethany Jenkins (22, 23) , Uwe John (11) , Matthew D. Johnson (24) , Andrew R. Juhl (18) , Anja Kamp (25, 26) , Laura A. Katz (27) , Ronald Kiene (28) , Alexander Kudryavtsev (29, 30) , Brian S. Leander (2) , Senjie Lin (31) , Connie Lovejoy (32) , Denis Lynn (33, 34) , Adrian Marchetti (35) , George Mcmanus (31) , Aurora M Nedelcu (36) , Susanne Menden-Deuer (22) , Cristina Miceli (37) , Thomas Mock (38) , Marina Montresor (39) , Mary Ann Moran (31) , Shauna Murray (40) , Govind Nadathur (41) , Satoshi Nagai (42) , Peter B. Ngam (10) , Brian Palenik (5) , Jan Pawlowski (30) , Giulio Petroni (43) , Gwenaël Piganeau (44) , Matthew C. Posewitz (45) , Karin Rengefors (46) , Giovanna Romano (39) , Mary E. Rumpho (47) , Tatiana Rynearson (22) , Kelly B. Schilling (10) , Declan C. Schroeder (48) , Alastair G.B. Simpson (1, 49) , Claudio H. Slamovits (1, 9) , David R. Smith (50) , G. Jason Smith (51) , Sarah R. Smith (5) , Heidi M. Sosik (24) , Peter Stief (26) , Edward Theriot (52) , Scott N. Twary (53) , Pooja E. Umale (10) , Daniel Vaulot (54) , Boris Wawrik (55) , Glen L. Wheeler (56, 48) , William H. Wilson (57) , Yan Xu (58) , Adriana Zingone (39) , Alexandra Z Worden (1, 3)
1 CIFAR - Canadian Institute for Advanced Research
2 Department of Botany
3 MBARI - Monterey Bay Aquarium Research Institute
4 SoMAS - School of Marine and Atmospheric Sciences [Stony Brook]
5 Marine Biology Research Division
6 The Josephine Bay Paul Center for comparative molecular biology and evolution
7 Department of Geological Sciences [Providence]
8 School of Oceanography [Seattle]
9 Department of biochemistry & molecular biology
10 NCGR - National center for genome resources
11 AWI - Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung = Alfred Wegener Institute for Polar and Marine Research = Institut Alfred-Wegener pour la recherche polaire et marine
12 Institute of Marine and Coastal Science
13 Department of Oceanography [College Station]
14 Department of biology
15 University of Delaware [Newark]
16 School of biological sciences
17 ESE - Ecologie Systématique et Evolution
18 Department of earth and environmental sciences and the Lamont-Doherty earth observatory
19 Department of Molecular Biosciences [Oslo]
20 Hawaii Institute of Marine Biology
21 Department of biomedical sciences
22 Graduate School of Oceanography [Narragansett]
23 Department of cell and molecular biology
24 WHOI - Woods Hole Oceanographic Institution
25 Jacobs University = Constructor University [Bremen]
26 Max Planck Institute for Marine Microbiology
27 Department of biological sciences
28 University of South Alabama
29 Department of invertebrate zoology
30 Department of genetics and evolution
31 Department of Marine sciences
32 département de biologie
33 Department of Integrative Biology
34 Department of zoology
35 MEAS - Department of Marine, Earth, and Atmospheric Sciences [NCSU]
36 UNB - University of New Brunswick
37 School of biosciences and biotechnology
38 School of Environmental Sciences [Norwich]
39 SZN - Stazione Zoologica Anton Dohrn
40 C3 - Plant Functional Biology and Climate Change Cluster
41 Department of Marrine sciences
42 National Research Institute of Fisheries Science
43 Department of biology
44 BIOM - Biologie intégrative des organismes marins
45 Department of Chemistry and Geochemistry
46 department of biology
47 Department of molecular and cell biology
48 Marine Biological Association
49 Department of biology
50 UWO - University of Western Ontario
51 Moss Landing Marine Laboratories
52 Section of Integrative Biology
53 LANL - Los Alamos National Laboratory
54 DIPO - Diversité et Interactions au sein du Plancton Océanique
55 department of microbiology and plant biology
56 PML - Plymouth Marine Laboratory
57 Bigelow Laboratory for Ocean Sciences
58 Princeton University
E Virginia Armbrust
  • Function : Author
  • PersonId : 911248
Connie Lovejoy
Marina Montresor
Jan Pawlowski
  • Function : Author
  • PersonId : 880486
Yan Xu
  • Function : Author
  • PersonId : 759531
  • IdRef : 181854627
Adriana Zingone

Abstract

Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and inadequate to address important questions about their biology, evolution, and ecology; this Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.
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Dates and versions

hal-01109521 , version 1 (26-01-2015)

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Patrick J Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E Allen, et al.. Community The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biology, 2014, 12 (6), pp.e1001889. ⟨10.1371/journal.pbio.1001889⟩. ⟨hal-01109521⟩
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